Bioinformatics machines

• Last updated: 2008/12/23

Servers

• hmsbarracouta.cs - SuperMicro
  • Primary ZFS/NFS and SAMBA file server
• hmsbeagle.cs - SuperMicro
  • Secondary ZFS/NFS and SAMBA file server

* codon.cs - SunFire X2200 (Opteron 1.8GHz 2GB RAM, 2x250GB

• • Virtual machines
    • dna.cs - main job server
    • rna.cs
• chromosome.cs - SunFire X2200 (Opteron 1.8GHz 2GB RAM 2x250GB HDD)
• transcriptome.cs -

Machine	Service	Service name	Dependencies	Notes
hmsbarracouta	nfs			primary
	samba			primary
hmsbeagle	nfs			backup
	samba			backup
codon	grid engine exec	sgeexecd.uwbif	nfs, ldap
	vmware web console	vmware	nfs	https://codon.cs:8333/
	puppet client	puppet	puppetmaster
evolve(virtual)	ldap	slapd
	cplex license manager	ilog-ilm
	puppet master	puppetmaster
	grid engine master	sgemaster.uwbif	nfs
	puppet client	puppet	puppetmaster
monod(virtual)	http	apache	nfs, ldap
	smtp	postfix	nfs, ldap
	imap	N/A
	cups	cupsys
	puppet client	puppet	puppetmaster
dna(virtual)	ssh		nfs, ldap	All machines have ssh, but regular users can only log in to dna.
	puppet client	puppet	puppetmaster
chromosome	grid engine exec	sgeexecd.uwbif	nfs, ldap
	puppet client	puppet	puppetmaster
histone	grid engine exec	sgeexecd.uwbif	nfs, ldap
	puppet client	puppet	puppetmaster
chromatin	grid engine exec	sgeexecd.uwbif	nfs, ldap
	puppet client	puppet	puppetmaster

Location

console access

• There is a KVM at the bottom of the rack. Push the button for the machine you want and then plug the USB keyboard into the machine you want to use. The KVM is a PS/2 keyboard/mouse, but many of the machines are USB-only

Login access

• For many of the machines there is a "cscf-adm" user. For others you will need to use "bifadmin"
• passwords are available in the usual location