BioinformaticsMachines < CF

CF Web>Research>ResearchGroups>BioInformatics>BioinformaticsMachines (2013-02-06, DrewPilcher) (raw view)

---+ Bioinformatics machines
   * Last updated: 2008/12/23

---++ Servers
   * hmsbarracouta.cs - SuperMicro
      * Primary ZFS/NFS and SAMBA file server
   * hmsbeagle.cs - SuperMicro
      * Secondary ZFS/NFS and SAMBA file server




* codon.cs - SunFire X2200 (Opteron 1.8GHz 2GB RAM, 2x250GB
      * Virtual machines
         * dna.cs - main job server
         * rna.cs
   * chromosome.cs - SunFire X2200 (Opteron 1.8GHz 2GB RAM 2x250GB HDD)
   * transcriptome.cs - 
|Machine|Service|Service name|Dependencies|Notes|
|hmsbarracouta|nfs|||primary|
||samba|||primary||
|hmsbeagle|nfs|||backup|
||samba|||backup||
|codon|grid engine exec|sgeexecd.uwbif|nfs, ldap||
||vmware web console|vmware|nfs|https://codon.cs:8333/||
||puppet client|puppet|puppetmaster|||
|evolve(virtual)|ldap|slapd|||
||cplex license manager|ilog-ilm||||
||puppet master|puppetmaster||||
||grid engine master|sgemaster.uwbif|nfs|||
||puppet client|puppet|puppetmaster|||
|monod(virtual)|http|apache|nfs, ldap||
||smtp|postfix|nfs, ldap|||
||imap|N/A||||
||cups|cupsys||||
||puppet client|puppet|puppetmaster|||
|dna(virtual)|ssh||nfs, ldap|All machines have ssh, but regular users can only log in to dna.|
||puppet client|puppet|puppetmaster|||
|chromosome|grid engine exec|sgeexecd.uwbif|nfs, ldap||
||puppet client|puppet|puppetmaster|||
|histone|grid engine exec|sgeexecd.uwbif|nfs, ldap||
||puppet client|puppet|puppetmaster|||
|chromatin|grid engine exec|sgeexecd.uwbif|nfs, ldap||
||puppet client|puppet|puppetmaster|||






---++ Location
The BIF servers are all in a rack in the CGL machine room

---++ console access
   * There is a KVM at the bottom of the rack.  Push the button for the machine you want and then plug the USB keyboard into the machine you want to use.  The KVM is a PS/2 keyboard/mouse, but many of the machines are USB-only

---++ Login access
   * For many of the machines there is a "cscf-adm" user.  For others you will need to use "bifadmin"
   * passwords are available in the [[CFPrivate.CscfPasswordBox][usual location]]

Topic revision: r4 - 2013-02-06 - DrewPilcher

Information in this area is meant for use by CSCF staff and is not official documentation, but anybody who is interested is welcome to use it if they find it useful.

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