Himrod cluster

This is a cluster belonging to Ashraf Aboulnaga and Hans DeSterck, purchase in May 2014, running since October 2014

Overview

role count cpu memory disk interconnect other
himrod.cs 1 2xIntel E5-2670(8C) 32GB Dell RAID (2TB) 4x 10GbE + 2x GbE
himrod-big-[1-4] 4 2x Intel E5-2670 (8C) 512GB 6x 600GB + 1x 200GB 2x 10GbE + 2x GbE  
himrod-[1-23] 23 2x Intel E5-2670 (8C) 256GB 6x 600GB + 1x 200GB 2x 10GbE + 2x GbE  
himrod-storage 1 2x Intel E5-2620 (6C) 64GB Dell RAID (50TB) 2x 10GbE + 2x GbE  

Sysadmin notes

Admin tools

  • IMPORTANT Currently I have a number of tools located under /cscf-adm/src/cluster - the plan is to move all of them to /usr/local/bin in the very near future.
  • This list below has been moved there

add_users file.csv

  • What:
    • * Add users from CSV file optionally specify home directory, email address, password and groups*
    • If the group is admin - the user will be get all of the admin groups
    • The script will email the user their password and account information
  • Usage: * ./add_users file.csv
  • See:
    • sync-users to sync all user changes to all of the nodes
  • Notes:
    • needs root
    • if the users email is NOT in uwdir you must add the full email to the csv file

del-user

  • Delete a user on all of the nodes
  • Usage:
    • del-user userid
  • Notes:
    • needs root perms

sync-users

  • sync user accounts, passwords, ssh keys and group setting to all of the nodes
  • Usage:
    • sync-users
    • This command can be run any time, and more then once without harm
  • Notes:
    • needs root

Checking nodes and NFS mounts

  • /cscf-adm/src/cluster/fix-mount
    • Verifies NFS mounts are working - mounts them if not

check-nodes

  • check that each node is on line or not
  • Usage:
    • check-nodes
  • Notes:
    • This can be used as a common template we use to perform a task on all nodes
    • Check to See if all of the nodes are online

ILOM managment

  • You can do full KVM management of each node (himrod has to be up)
    • This includes powering up, console, booting remote media from your own desktop, etc
  • Browse directly to the ILOM interface as listed below
    • Accept the security certificate
    • Login userid: cscf-adm - fall 2013 password - see CSCF staff
10.0.150.10 ilom-himrod-storage
10.0.150.11 ilom-himrod-big-1
10.0.150.12 ilom-himrod-big-2
10.0.150.13 ilom-himrod-big-3
10.0.150.14 ilom-himrod-big-4
10.0.150.101 ilom-himrod-1
10.0.150.102 ilom-himrod-2
10.0.150.103 ilom-himrod-3
10.0.150.104 ilom-himrod-4
10.0.150.105 ilom-himrod-5
10.0.150.106 ilom-himrod-6
10.0.150.107 ilom-himrod-7
10.0.150.108 ilom-himrod-8
10.0.150.109 ilom-himrod-9
10.0.150.110 ilom-himrod-10
10.0.150.111 ilom-himrod-11
10.0.150.112 ilom-himrod-12
10.0.150.113 ilom-himrod-13
10.0.150.114 ilom-himrod-14
10.0.150.115 ilom-himrod-15
10.0.150.116 ilom-himrod-16
10.0.150.117 ilom-himrod-17
10.0.150.118 ilom-himrod-18
10.0.150.119 ilom-himrod-19
10.0.150.120 ilom-himrod-20
10.0.150.121 ilom-himrod-21
10.0.150.122 ilom-himrod-22
10.0.150.123 ilom-himrod-23
10.0.150.27  ilom-himrod-switch

Himrod Admin setup overview SAMBA, DNSMASQ, DHCP, FIREWALL, APACHE, NFS, Imaging tools

  • HimrodTools overview of the setup and installaion of services on HIMROD

iDRac tools and scripts

ipmitools

Imaging a node

PXE booting recovry and imaging tools

Setup and configuration Scripts

Packages

finding packages

  • Example: apt-cache search postgres -n
    • Search for postgres in the one line description
  • Example: apt-cahe search postgres
    • Searchj for postgres in the entire description

example script to install packages on all of the nodes

  • /cscf-adm/src/cluster/install-mpi
    • The script first installed the packages listed in the script on himrod and then on the nodes
    • The script is only 27 lines long and you will only have to change 2 lines!
    • NODES and "common_vars* is pulled in from the search path - in this case: /usr/local/bin
      • (ie. they do NOT have to be in the current directory)
!/bin/bash
#
# Mike Gore, 10 Oct 2014
#
# Install openmpi on the nodes and headnode

. common_vars
. NODES

update_list
update_packages netpipe-openmpi openmpi-bin openmpi-checkpoint openmpi-common openmpi-doc 


for i in $NODES
do 
   if ping -c 1 $i >/dev/null 2>&1
   then
   cat <<EOF | ssh root@"$i" 
. common_vars
. NODES
update_list
update_packages netpipe-openmpi openmpi-bin openmpi-checkpoint openmpi-common openmpi-doc 
EOF
   else
      echo $i is down
   fi
done

Disks on nodes

  • Each node has disks mounted with names /localdiskN where N is 0 .. 5

Tools

OPENMPI

  • I have installed openmpi on himrod and all of the nodes
  • As of 10 Oct 2014 only the configuration part has not been completed

Limits

I have added the following lines to the /etc/security/limits.conf file for now (until I am given a better idea of the other entries we must set)
(I used the /cscf-adm/src/cluster/sync-users script to update this file on the nodes - I ran it as root)
Note: the nodes may need to be restarted
There is a script that does this restart correctly is under /cscf-adm/src/cluster called restart_all_nodes
(Must be run as root)

# system defaults
*          hard    cpu             unlimited
*          hard    nproc           unlimited
*          hard    as              unlimited
*          hard    data            unlimited
*          hard    sigpending      unlimited
*          hard    nofile          unlimited
*          hard    msqqueue        unlimited
*          hard    locks           unlimited
*          hard    file            unlimited
Topic revision: r15 - 2016-10-28 - MikeGore
 
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