NGS:

1. Illumina sequencing:

https://www.ebi.ac.uk/training/online/course/ebi-next-generation-sequencing-practical-course/what-next-generation-dna-sequencing/illumina-

Indices are used to combine multiple samples together for a single NGS run.
https://www.youtube.com/watch?v=fCd6B5HRaZ8

2. 454 sequencing:
https://www.ebi.ac.uk/training/online/course/ebi-next-generation-sequencing-practical-course/what-next-generation-dna-sequencing/454-seque

3. Ion Torrent sequencing:
https://www.ebi.ac.uk/training/online/course/ebi-next-generation-sequencing-practical-course/what-next-generation-dna-sequencing/ion-torre

Also: https://www.youtube.com/watch?v=WYBzbxIfuKs

4. Nanopore sequencing:
https://nanoporetech.com/resource-centre/videos/nanopore-dna-sequencing

5. FASTQ format
https://en.wikipedia.org/wiki/FASTQ_format

e.g.
@ERR022484.110 IL3_4946:5:1:15692:1051/1
CNGAAGCAAAGTGTGTGCGCGAAATGCTCGTCAGGAAGATCCAAGAGGAGTCGCTGCGCACTTACCTTTTCACCTA
+
A!AA=CCCDBHAG=HBHHEDGCFFADHADD>D>D@>@==>BA<=>:?=;>9<><8:::879988:877:9;<9;95
@ERR022484.142 IL3_4946:5:1:2246:1064/1
GTTTCTTTCTGCTTATTAAACATGTTGGCTTTGTCCTCCAGCTCCTTCTGTTTCTCCTTCCACATCTGGATTTCTT
+
BFFFFFFEFFFFFFFFF=E=@=EECBEFEAFEFDA?D<A=?B<;=A=<:;:==.<567;6%*.%/2511*344%0:
@ERR022484.297 IL3_4946:5:1:3383:1074/1
CAGACTTCATTTCATGTTTCATCCCAGCTCCATTGGGTTTGTCCTTTTGCCATTTCGATATGGCAGCAAAGATCCC
+
HHGGHHHHGHHHHEHGHHHHFGHHHDGDCFE=CEEEE;EEEB>=EDECA=;<AA?:=5;9?;;6:<:7782**44:

6. RNA-seq data from Zebrafish
ftp://ftp.ebi.ac.uk/pub/training/Train_online/RNA-seq_exercise/

7. Zebrafish genome
http://www.sanger.ac.uk/science/data/zebrafish-genome-project